HuBMAP Get Sample
Get the full record for a single HuBMAP tissue Sample by its HuBMAP ID, including its CCF/RUI spatial registration. For spatially-registered blocks and sections this returns rui_location: the 3-D dimensions (x/y/z + units) of the tissue, the placement_target reference organ in the Common Coordinate Framework (e.g. a 3-D kidney/heart/lung model), and ccf_annotations -- the list of CCF/UBERON anatomical structures the specimen overlaps. Also returns sample_category, organ, owning group, protocol…
Overview
Get the full record for a single HuBMAP tissue Sample by its HuBMAP ID, including its CCF/RUI spatial registration. For spatially-registered blocks and sections this returns rui_location: the 3-D dimensions (x/y/z + units) of the tissue, the placement_target reference organ in the Common Coordinate Framework (e.g. a 3-D kidney/heart/lung model), and ccf_annotations -- the list of CCF/UBERON anatomical structures the specimen overlaps. Also returns sample_category, organ, owning group, protocol URL, and the parent donor's HuBMAP ID. Obtain valid sample IDs from HuBMAP_search_samples. Example: HBM658.BXNB.873.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default HuBMAP Get Sample call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_HuBMAP_get_sample
- Tool name
- HuBMAP_get_sample
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse