HuBMAP Search Samples
Search HuBMAP (Human BioMolecular Atlas Program) biospecimen Samples (the physical tissue layer, distinct from datasets). HuBMAP Samples are anatomical blocks, sections, organs, or cell suspensions cut from human donors and registered into the Common Coordinate Framework (CCF). Filter by organ (2-letter RUI code) and sample_category, and optionally restrict to spatially-registered specimens (those carrying CCF/RUI coordinates). Organ codes: LK=Left Kidney, RK=Right Kidney, LL=Left Lung, RL=Righ…
Overview
Search HuBMAP (Human BioMolecular Atlas Program) biospecimen Samples (the physical tissue layer, distinct from datasets). HuBMAP Samples are anatomical blocks, sections, organs, or cell suspensions cut from human donors and registered into the Common Coordinate Framework (CCF). Filter by organ (2-letter RUI code) and sample_category, and optionally restrict to spatially-registered specimens (those carrying CCF/RUI coordinates). Organ codes: LK=Left Kidney, RK=Right Kidney, LL=Left Lung, RL=Right Lung, HT=Heart, LV=Liver, SP=Spleen, PA=Pancreas, SK=Skin, BR=Brain, BM=Bone Marrow, SI=Small Intestine, LI=Large Intestine, UT=Uterus, PL=Placenta, BL=Bladder, LY=Lymph Node. Each result reports whether the sample is spatially registered and its donor link. Use HuBMAP_get_sample to retrieve the full CCF/RUI spatial coordinates for a returned sample.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default HuBMAP Search Samples call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_HuBMAP_search_samples
- Tool name
- HuBMAP_search_samples
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse