Cortexa research tool·genomics·humanmine

HumanMine Search

Search HumanMine (InterMine) for genes, proteins, pathways, diseases, and other biological entities related to human, mouse, and rat. HumanMine integrates data from 30+ sources including NCBI Gene, UniProt, Ensembl, GO, KEGG, Reactome, OMIM, and GWAS Catalog. Returns entity IDs, types, names, symbols, and organism information. Use the facet_Category parameter to filter results to a specific type (Gene, Protein, Pathway, Disease, Publication, etc.).

Livelast probed 2026-04-30 23:07Z· 88msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 88ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "facet_Category": {
      "description": "Filter by entity type: 'Gene', 'Protein', 'Pathway', 'Disease', 'Publication', 'GWASResult', 'GOTerm', 'ProteinDomain', etc.",
      "type": [
        "string",
        "null"
      ]
    },
    "q": {
      "description": "Search query: gene symbol (e.g., 'TP53', 'BRCA1'), gene name, disease name, pathway name, or any biological term",
      "type": "string"
    },
    "size": {
      "description": "Maximum number of results to return (default 10, max 100)",
      "type": [
        "integer",
        "null"
      ]
    }
  },
  "required": [
    "q"
  ],
  "type": "object"
}

Examples (1)

Default HumanMine Search call

public-safeinput

{
  "q": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_HumanMine_search
Tool name: HumanMine_search
Added: 2026-04-30 22:47Z
Tags: tooluniverse

HumanMine Search

Livelast probed 2026-04-30 23:07Z· 88msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "facet_Category": { "description": "Filter by entity type: 'Gene', 'Protein', 'Pathway', 'Disease', 'Publication', 'GWASResult', 'GOTerm', 'ProteinDomain', etc.", "type": [ "string", "null" ] }, "q": { "description": "Search query: gene symbol (e.g., 'TP53', 'BRCA1'), gene name, disease name, pathway name, or any biological term", "type": "string" }, "size": { "description": "Maximum number of results to return (default 10, max 100)", "type": [ "integer", "null" ] } }, "required": [ "q" ], "type": "object" }