INDRA Get Statements

Overview

Get literature-mined biological statements for a gene, protein, or chemical from INDRA DB. Returns mechanistic relationships (Activation, Inhibition, Phosphorylation, Complex, etc.) with supporting evidence from PubMed articles. INDRA aggregates knowledge from 30+ NLP readers across millions of publications. Use 'agent' for the entity name (e.g., 'TP53', 'EGFR', 'gefitinib'). Optionally filter by statement 'type' (Activation, Inhibition, Phosphorylation, etc.) or specify 'agent2' for pairwise interactions.

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed

1d ago

Last success

1d ago

Last latency

112ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "agent": {
      "description": "Gene symbol, protein name, or chemical name (e.g., 'TP53', 'EGFR', 'gefitinib', 'BRAF')",
      "type": "string"
    },
    "agent2": {
      "description": "Second agent for pairwise queries (e.g., agent='BRAF' agent2='MAP2K1')",
      "type": "string"
    },
    "ev_limit": {
      "default": 2,
      "description": "Maximum evidence items per statement (default: 2)",
      "type": "integer"
    },
    "limit": {
      "default": 10,
      "description": "Maximum statements to return (default: 10)",
      "type": "integer"
    },
    "operation": {
      "const": "get_statements",
      "description": "Operation type (fixed: get_statements)",
      "type": "string"
    },
    "type": {
      "description": "Filter by statement type: Activation, Inhibition, Phosphorylation, Dephosphorylation, Ubiquitination, Complex, IncreaseAmount, DecreaseAmount, Translocation, Autophosphorylation",
      "type": "string"
    }
  },
  "required": [
    "agent"
  ],
  "type": "object"
}

Examples (1)

{
  "agent": "",
  "ev_limit": 3,
  "limit": 3
}

Identifiers

Catalog ID

tu_INDRA_get_statements

Tool name

INDRA_get_statements

Added

2026-04-30 22:47Z

Tags

tooluniverse