MEME Tomtom Compare
Compare a query motif against known motif databases (JASPAR, HOCOMOCO, CIS-BP) using TOMTOM from the MEME Suite. Given a motif in MEME format, identifies the most similar known transcription factor binding motifs. Useful for annotating de novo discovered motifs — e.g., after running MEME motif discovery, use TOMTOM to determine which TF likely binds the discovered motif. Returns matches ranked by E-value with query/target consensus sequences. Note: this submits a job to meme-suite.org and polls…
Overview
Compare a query motif against known motif databases (JASPAR, HOCOMOCO, CIS-BP) using TOMTOM from the MEME Suite. Given a motif in MEME format, identifies the most similar known transcription factor binding motifs. Useful for annotating de novo discovered motifs — e.g., after running MEME motif discovery, use TOMTOM to determine which TF likely binds the discovered motif. Returns matches ranked by E-value with query/target consensus sequences. Note: this submits a job to meme-suite.org and polls for results (typically 5-20 seconds).
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default MEME Tomtom Compare call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_MEME_tomtom_compare
- Tool name
- MEME_tomtom_compare
- Added
- 2026-05-01 00:58Z
- Tags
- tooluniverse