Cortexa research tool·structure·mgnify_expanded

MGnify Get Taxonomy

Get taxonomic composition from a MGnify metagenomics analysis. Returns organisms detected with their abundance counts, taxonomic lineage (domain/phylum/class/order/family/genus/species), and rank. Supports SSU (16S/18S) and LSU (23S/28S) rRNA marker genes. Use MGnify_list_analyses to find analysis IDs for a study. Example: MGYA00585482 returns Bacteria, Proteobacteria, Firmicutes lineages with counts.

Livelast probed 2026-05-01 01:00Z· 88msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 88ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "analysis_id": {
      "description": "MGnify analysis accession (e.g., 'MGYA00585482'). Find IDs via MGnify_list_analyses.",
      "type": "string"
    },
    "page_size": {
      "default": 25,
      "description": "Number of taxa to return per page (default 25, max 100).",
      "type": "integer"
    },
    "rna_type": {
      "default": "ssu",
      "description": "rRNA marker type: 'ssu' for 16S/18S (default) or 'lsu' for 23S/28S.",
      "type": "string"
    }
  },
  "required": [
    "analysis_id"
  ],
  "type": "object"
}

Examples (1)

Default MGnify Get Taxonomy call

public-safeinput

{
  "analysis_id": "",
  "page_size": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_MGnify_get_taxonomy
Tool name: MGnify_get_taxonomy
Added: 2026-05-01 00:58Z
Tags: tooluniverse

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