Cortexa research tool·biomedical·mgnify_expanded

MGnify Search Genomes

Search the MGnify genome catalog for metagenome-assembled genomes (MAGs) and isolate genomes. Filter by taxonomy lineage or genome type. Returns quality metrics, taxonomy, and protein counts. Useful for finding reference genomes from specific microbial lineages.

Livelast probed 2026-04-30 23:07Z· 1094msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 1094ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "genome_type": {
      "description": "Filter by genome source type. Options: 'Isolate', 'MAG'.",
      "type": "string"
    },
    "page": {
      "description": "Page number (default 1).",
      "type": "integer"
    },
    "page_size": {
      "description": "Results per page (default 25, max 100).",
      "type": "integer"
    },
    "taxonomy": {
      "description": "Taxonomy lineage filter. Examples: 'Firmicutes', 'Bacteroidetes', 'Proteobacteria'.",
      "type": "string"
    }
  },
  "type": "object"
}

Examples (1)

Default MGnify Search Genomes call

public-safeinput

{
  "page": 1,
  "page_size": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_MGnify_search_genomes
Tool name: MGnify_search_genomes
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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