MassIVE Get Protein Identifications
Identification-level access to MassIVE datasets via the ProXI standard API. MassIVE's other tools return only dataset metadata; this tool exposes the actual protein identifications. Three modes: (1) per-dataset protein summaries - pass 'accession' (e.g. 'PXD000561') to get identified proteins with countPSM/countPeptides/countPeptidoforms/countDatasets; (2) cross-dataset protein lookup - pass 'protein_accession' (e.g. 'A2M_MOUSE') to find how many MassIVE datasets identified a protein; (3) pepti…
Overview
Identification-level access to MassIVE datasets via the ProXI standard API. MassIVE's other tools return only dataset metadata; this tool exposes the actual protein identifications. Three modes: (1) per-dataset protein summaries - pass 'accession' (e.g. 'PXD000561') to get identified proteins with countPSM/countPeptides/countPeptidoforms/countDatasets; (2) cross-dataset protein lookup - pass 'protein_accession' (e.g. 'A2M_MOUSE') to find how many MassIVE datasets identified a protein; (3) peptide-spectrum matches - set result_type='psms' with a dataset 'accession' to get PSMs (peptide sequence + charge). Returns a structured success/error envelope.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default MassIVE Get Protein Identifications call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_MassIVE_get_protein_identifications
- Tool name
- MassIVE_get_protein_identifications
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse