MaveDB Get Effect Matrix
One-shot DMS data loader: fetch a MaveDB score set, parse HGVS to (ref_aa, position, alt_aa), filter to single missense, optionally verify position numbering against a UniProt canonical sequence, and reshape into a (20 amino acids × n_positions) effect matrix ready for downstream analysis. Hides the boilerplate that variant-effect-prediction benchmarking and residue-mechanism interpretation skills used to inline. Returns the matrix, the position list, the standard amino acid order, and explicit…
Overview
One-shot DMS data loader: fetch a MaveDB score set, parse HGVS to (ref_aa, position, alt_aa), filter to single missense, optionally verify position numbering against a UniProt canonical sequence, and reshape into a (20 amino acids × n_positions) effect matrix ready for downstream analysis. Hides the boilerplate that variant-effect-prediction benchmarking and residue-mechanism interpretation skills used to inline. Returns the matrix, the position list, the standard amino acid order, and explicit numbering / drop / score-field metadata so the caller can audit what was loaded.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default MaveDB Get Effect Matrix call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_MaveDB_get_effect_matrix
- Tool name
- MaveDB_get_effect_matrix
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse