MaveDB Get Effect Matrix
One-shot DMS data loader: fetch a MaveDB score set, parse HGVS to (ref_aa, position, alt_aa), filter to single missense, optionally verify position numbering against a UniProt canonical sequence, and reshape into a (20 amino acids × n_positions) effect matrix ready for downstream analysis. Hides the boilerplate that variant-effect-prediction benchmarking and residue-mechanism interpretation skills used to inline. Returns the matrix, the position list, the standard amino acid order, and explicit…
Overview
One-shot DMS data loader: fetch a MaveDB score set, parse HGVS to (ref_aa, position, alt_aa), filter to single missense, optionally verify position numbering against a UniProt canonical sequence, and reshape into a (20 amino acids × n_positions) effect matrix ready for downstream analysis. Hides the boilerplate that variant-effect-prediction benchmarking and residue-mechanism interpretation skills used to inline. Returns the matrix, the position list, the standard amino acid order, and explicit numbering / drop / score-field metadata so the caller can audit what was loaded.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default MaveDB Get Effect Matrix call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_MaveDB_get_effect_matrix
- Tool name
- MaveDB_get_effect_matrix
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse