MaveDB Get Mapped Variants
Get genomically-mapped variant coordinates (GA4GH VRS Allele + ClinGen Allele ID) for a MaveDB score set. Each MAVE variant is mapped to a postMapped VRS Allele carrying a genomic SequenceLocation (chromosome + start/end on the reference assembly, e.g. NC_000013.11 for chr13) plus the ClinGen canonical Allele ID (e.g. CA387754009), which links the functional score to ClinVar, dbSNP, and gnomAD. Intronic or unmappable variants have post_mapped=null and an error_message. Use this to translate raw…
Overview
Get genomically-mapped variant coordinates (GA4GH VRS Allele + ClinGen Allele ID) for a MaveDB score set. Each MAVE variant is mapped to a postMapped VRS Allele carrying a genomic SequenceLocation (chromosome + start/end on the reference assembly, e.g. NC_000013.11 for chr13) plus the ClinGen canonical Allele ID (e.g. CA387754009), which links the functional score to ClinVar, dbSNP, and gnomAD. Intronic or unmappable variants have post_mapped=null and an error_message. Use this to translate raw MAVE scores into genome coordinates for downstream variant annotation. Obtain the URN from MaveDB_search_score_sets.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default MaveDB Get Mapped Variants call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_MaveDB_get_mapped_variants
- Tool name
- MaveDB_get_mapped_variants
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse