Cortexa research tool·drug discovery·mcule

Mcule List Databases

List available compound database files from Mcule for bulk download. Mcule provides pre-built databases of purchasable compounds including: Full (139M+ entries), In Stock (7M+), Building Blocks (6.4M+), Virtual (132M+), Known Stock Amounts, Bioactive, and more. Returns database names, descriptions, entry counts, last updated dates, and download links (SDF.gz and SMILES.gz formats). Useful for setting up local compound databases for virtual screening. Public endpoint, no auth required.

Livelast probed 2026-05-01 01:00Z· 109msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 109ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "operation": {
      "description": "Operation type",
      "enum": [
        "list_databases"
      ],
      "type": "string"
    },
    "public_only": {
      "default": true,
      "description": "If true (default), only return publicly accessible databases",
      "type": [
        "boolean",
        "null"
      ]
    }
  },
  "required": [
    "operation"
  ],
  "type": "object"
}

Examples (1)

Default Mcule List Databases call

public-safeinput

{
  "operation": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_Mcule_list_databases
Tool name: Mcule_list_databases
Added: 2026-05-01 00:58Z
Tags: tooluniverse

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