Cortexa research tool·genomics·monarch_v3

MonarchV3 Get Associations

Query cross-species associations between biomedical entities in the Monarch Initiative knowledge graph. Find gene-phenotype, disease-phenotype, gene-disease, or gene-pathway associations. Uses Biolink model categories to specify association type. Integrates data from OMIM, ClinVar, HPO, MGI, ZFIN, FlyBase, WormBase. Example: HGNC:11998 (TP53) with category GeneToPhenotypicFeatureAssociation returns phenotypes like hepatocellular carcinoma and reticular hyperpigmentation.

Livelast probed 2026-04-30 23:07Z· 115msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 115ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "category": {
      "description": "Biolink association category. Options: 'biolink:GeneToPhenotypicFeatureAssociation' (gene->phenotypes), 'biolink:DiseaseToPhenotypicFeatureAssociation' (disease->phenotypes), 'biolink:CorrelatedGeneToDiseaseAssociation' (gene->diseases, correlated), 'biolink:CausalGeneToDiseaseAssociation' (gene->diseases, causal), 'biolink:GeneToPathwayAssociation' (gene->pathways), 'biolink:VariantToDiseaseAssociation' (variant->diseases), 'biolink:GeneToExpressionSiteAssociation' (gene->expression sites/tissues).",
      "type": "string"
    },
    "limit": {
      "description": "Maximum number of associations to return (default: 20, max: 200).",
      "type": "integer"
    },
    "subject": {
      "description": "Subject entity CURIE. Examples: 'HGNC:11998' (TP53), 'MONDO:0005148' (type 2 diabetes), 'HP:0001250' (seizure).",
      "type": "string"
    }
  },
  "required": [
    "subject",
    "category"
  ],
  "type": "object"
}

Examples (1)

Default MonarchV3 Get Associations call

public-safeinput

{
  "category": "",
  "limit": 3,
  "subject": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_MonarchV3_get_associations
Tool name: MonarchV3_get_associations
Added: 2026-04-30 22:47Z
Tags: tooluniverse

MonarchV3 Get Associations

Livelast probed 2026-04-30 23:07Z· 115msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "category": { "description": "Biolink association category. Options: 'biolink:GeneToPhenotypicFeatureAssociation' (gene->phenotypes), 'biolink:DiseaseToPhenotypicFeatureAssociation' (disease->phenotypes), 'biolink:CorrelatedGeneToDiseaseAssociation' (gene->diseases, correlated), 'biolink:CausalGeneToDiseaseAssociation' (gene->diseases, causal), 'biolink:GeneToPathwayAssociation' (gene->pathways), 'biolink:VariantToDiseaseAssociation' (variant->diseases), 'biolink:GeneToExpressionSiteAssociation' (gene->expression sites/tissues).", "type": "string" }, "limit": { "description": "Maximum number of associations to return (default: 20, max: 200).", "type": "integer" }, "subject": { "description": "Subject entity CURIE. Examples: 'HGNC:11998' (TP53), 'MONDO:0005148' (type 2 diabetes), 'HP:0001250' (seizure).", "type": "string" } }, "required": [ "subject", "category" ], "type": "object" }