Cortexa research tool·genomics·monarch_v3

MonarchV3 Search

Search the Monarch Initiative knowledge graph for biomedical entities by name or keyword. Returns genes, diseases, phenotypes, and other entities matching the query, with their CURIE identifiers and categories. Useful for finding entity IDs to use with MonarchV3_get_entity and MonarchV3_get_associations. Example: searching 'BRCA1' returns HGNC:1100 (gene), 'Alzheimer' returns MONDO disease entries.

Livelast probed 2026-04-30 23:07Z· 116msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 116ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "category": {
      "description": "Filter by entity category. Options: 'biolink:Gene', 'biolink:Disease', 'biolink:PhenotypicFeature', 'biolink:NamedThing'. Default: all categories.",
      "type": "string"
    },
    "limit": {
      "description": "Maximum results to return (default: 10, max: 50).",
      "type": "integer"
    },
    "q": {
      "description": "Alias for query parameter.",
      "type": "string"
    },
    "query": {
      "description": "Search query. Can be gene names, disease names, phenotype terms, etc. Examples: 'BRCA1', 'breast cancer', 'seizure', 'insulin resistance'.",
      "type": "string"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default MonarchV3 Search call

public-safeinput

{
  "limit": 3,
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_MonarchV3_search
Tool name: MonarchV3_search
Added: 2026-04-30 22:47Z
Tags: tooluniverse

MonarchV3 Search

Livelast probed 2026-04-30 23:07Z· 116msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "category": { "description": "Filter by entity category. Options: 'biolink:Gene', 'biolink:Disease', 'biolink:PhenotypicFeature', 'biolink:NamedThing'. Default: all categories.", "type": "string" }, "limit": { "description": "Maximum results to return (default: 10, max: 50).", "type": "integer" }, "q": { "description": "Alias for query parameter.", "type": "string" }, "query": { "description": "Search query. Can be gene names, disease names, phenotype terms, etc. Examples: 'BRCA1', 'breast cancer', 'seizure', 'insulin resistance'.", "type": "string" } }, "required": [], "type": "object" }