MouseMine Search

Overview

Search MouseMine, the InterMine data warehouse for mouse (Mus musculus) genomics data from MGI (Mouse Genome Informatics). Searches across genes, alleles, proteins, publications, gene ontology terms, protein domains, and more. Returns matching records with category facets and relevance scores. MouseMine integrates data from MGI including gene annotations, phenotypes, alleles, expression data, pathways, and disease models. Use facet_Category parameter to filter by specific entity type (e.g., 'ProteinCodingGene', 'Allele', 'Publication', 'Protein').

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed

1d ago

Last success

1d ago

Last latency

109ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "facet_Category": {
      "description": "Filter results by entity category. Options include: 'ProteinCodingGene', 'Gene', 'Allele', 'Protein', 'Publication', 'Genotype', 'GOTerm', 'ProteinDomain', 'GXDExpression', 'NcRNAGene', 'AntisenseLncRNAGene', 'Strain', 'HTExperiment', 'InteractionExperiment', 'DOTerm', 'UniProtFeature'.",
      "type": "string"
    },
    "format": {
      "default": "json",
      "description": "Response format. Must be 'json'.",
      "type": "string"
    },
    "q": {
      "description": "Search query: gene symbol (e.g., 'Brca1', 'Tp53', 'Sox9'), protein name, disease term, or free text.",
      "type": "string"
    },
    "size": {
      "default": 10,
      "description": "Number of results to return (default: 10, max: 100).",
      "type": "integer"
    }
  },
  "required": [
    "q"
  ],
  "type": "object"
}

Examples (1)

{
  "q": "",
  "size": 1
}

Identifiers

Catalog ID

tu_MouseMine_search

Tool name

MouseMine_search

Added

2026-04-30 22:47Z

Tags

tooluniverse