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Research tool·structure·ncbi_datasets
NCBIDatasets List Genomes By Taxon
List genome assemblies available for a taxon (NCBI tax id or scientific name) via the NCBI Datasets v2 API. Returns a summary list of assemblies (accession, assembly name/level, RefSeq category, release date, total length, N50, GC%) plus the total count available. Use to discover what genomes exist for an organism or clade, e.g. all Escherichia coli or Mycobacterium tuberculosis assemblies. Set reference_only to restrict to reference/representative genomes. No API key required.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 26 lines · 558 chars
Examples (1)
Default NCBIDatasets List Genomes By Taxon call
public-safeinput
JSON · 5 lines · 61 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_NCBIDatasets_list_genomes_by_taxon
- Tool name
- NCBIDatasets_list_genomes_by_taxon
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse