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Research tool·structure·ncbi_datasets

NCBIDatasets List Genomes By Taxon

List genome assemblies available for a taxon (NCBI tax id or scientific name) via the NCBI Datasets v2 API. Returns a summary list of assemblies (accession, assembly name/level, RefSeq category, release date, total length, N50, GC%) plus the total count available. Use to discover what genomes exist for an organism or clade, e.g. all Escherichia coli or Mycobacterium tuberculosis assemblies. Set reference_only to restrict to reference/representative genomes. No API key required.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 26 lines · 558 chars

Examples (1)

Default NCBIDatasets List Genomes By Taxon call

public-safeinput
JSON · 5 lines · 61 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_NCBIDatasets_list_genomes_by_taxon
Tool name
NCBIDatasets_list_genomes_by_taxon
Added
2026-07-29 18:13Z
Tags
tooluniverse
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