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Cortexa research tool·genomics·ncbi_sra

NCBI SRA Search Runs

Search NCBI Sequence Read Archive (SRA) for NGS/RNA-seq sequencing runs by study accession, organism, sequencing strategy (RNA-Seq, WGS, ChIP-Seq), platform (ILLUMINA, OXFORD_NANOPORE), or library source. Returns SRA UIDs which can be used with other SRA tools to retrieve metadata and download links. Essential for discovering high-throughput sequencing data from public repositories. Use this to find relevant sequencing experiments before accessing the actual FASTQ data files.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 50 lines · 1,833 chars

Examples (1)

Default NCBI SRA Search Runs call

public-safeinput
JSON · 4 lines · 36 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_NCBI_SRA_search_runs
Tool name
NCBI_SRA_search_runs
Added
2026-04-30 22:47Z
Tags
tooluniverse
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