Cortexa research tool·chemistry·omicsdi

OmicsDI Search Datasets

Search across multiple omics repositories integrated in OmicsDI (Omics Discovery Index). Searches GEO, ArrayExpress, PRIDE, MetaboLights, MetabolomicsWorkbench, PeptideAtlas, and 20+ other omics repositories. Filter by omics type, organism, tissue, or date. Returns dataset IDs, titles, sources, organisms, omics types, and citation counts. Use omics_type to filter: 'Transcriptomics', 'Proteomics', 'Metabolomics', 'Genomics', 'Lipidomics'.

Livelast probed 2026-04-30 23:07Z· 98msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 98ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "omics_type": {
      "description": "Filter by omics type: 'Transcriptomics', 'Proteomics', 'Metabolomics', 'Genomics', 'Lipidomics'",
      "type": [
        "string",
        "null"
      ]
    },
    "order": {
      "description": "Sort order: 'desc' or 'asc'",
      "type": [
        "string",
        "null"
      ]
    },
    "organism": {
      "description": "Filter by organism (e.g., 'Homo sapiens', 'Mus musculus')",
      "type": [
        "string",
        "null"
      ]
    },
    "query": {
      "description": "Search query text (e.g., 'Alzheimer brain', 'BRCA1 cancer', 'gut microbiome')",
      "type": "string"
    },
    "size": {
      "description": "Number of results to return (default 10, max 100)",
      "type": [
        "integer",
        "null"
      ]
    },
    "sortfield": {
      "description": "Sort field: 'publication_date', 'id', 'title', 'views', 'downloads'",
      "type": [
        "string",
        "null"
      ]
    },
    "start": {
      "description": "Offset for pagination (default 0)",
      "type": [
        "integer",
        "null"
      ]
    },
    "tissue": {
      "description": "Filter by tissue/cell type (e.g., 'brain', 'liver', 'blood')",
      "type": [
        "string",
        "null"
      ]
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Examples (1)

Default OmicsDI Search Datasets call

public-safeinput

{
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_OmicsDI_search_datasets
Tool name: OmicsDI_search_datasets
Added: 2026-04-30 22:47Z
Tags: tooluniverse

OmicsDI Search Datasets

Livelast probed 2026-04-30 23:07Z· 98msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "omics_type": { "description": "Filter by omics type: 'Transcriptomics', 'Proteomics', 'Metabolomics', 'Genomics', 'Lipidomics'", "type": [ "string", "null" ] }, "order": { "description": "Sort order: 'desc' or 'asc'", "type": [ "string", "null" ] }, "organism": { "description": "Filter by organism (e.g., 'Homo sapiens', 'Mus musculus')", "type": [ "string", "null" ] }, "query": { "description": "Search query text (e.g., 'Alzheimer brain', 'BRCA1 cancer', 'gut microbiome')", "type": "string" }, "size": { "description": "Number of results to return (default 10, max 100)", "type": [ "integer", "null" ] }, "sortfield": { "description": "Sort field: 'publication_date', 'id', 'title', 'views', 'downloads'", "type": [ "string", "null" ] }, "start": { "description": "Offset for pagination (default 0)", "type": [ "integer", "null" ] }, "tissue": { "description": "Filter by tissue/cell type (e.g., 'brain', 'liver', 'blood')", "type": [ "string", "null" ] } }, "required": [ "query" ], "type": "object" }