OmniPath Get Annotation Resource Geneset
Retrieve the ENTIRE annotated gene/protein set (resource-wide membership) for an OmniPath annotation resource, with NO protein filter. This is the reverse of per-protein annotation lookup: instead of 'what does OmniPath say about gene X', it answers 'list every gene/protein in resource Y'. Use it to fetch curated functional gene sets such as all cell-surface proteins (Surfaceome), all kinases (kinase.com), all transcription factors (TFcensus), all phosphatases (Phosphatome), or all cancer drive…
Overview
Retrieve the ENTIRE annotated gene/protein set (resource-wide membership) for an OmniPath annotation resource, with NO protein filter. This is the reverse of per-protein annotation lookup: instead of 'what does OmniPath say about gene X', it answers 'list every gene/protein in resource Y'. Use it to fetch curated functional gene sets such as all cell-surface proteins (Surfaceome), all kinases (kinase.com), all transcription factors (TFcensus), all phosphatases (Phosphatome), or all cancer driver genes (CancerGeneCensus). OmniPath integrates 80+ such annotation resources. Each returned member lists its label/value annotations from the resource (grouped from OmniPath's long-format rows). Example: resource='CancerGeneCensus' returns 752 unique driver genes from 9755 records, including KRAS (UniProt P01116, tier=1, hallmark=True); resource='Surfaceome' returns the full surfaceome including SLC12A8 (A0AV02, mainclass=Transporters); resource='kinase.com' returns PRKCB (P05771, group=AGC); resource='TFcensus' returns HIVEP2 (P31629, tfcensus_class=a).
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default OmniPath Get Annotation Resource Geneset call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_OmniPath_get_annotation_resource_geneset
- Tool name
- OmniPath_get_annotation_resource_geneset
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse