PDB REDO Get Structure Quality
Get re-refined structure quality metrics from PDB-REDO for a given PDB entry. PDB-REDO is a databank of optimized macromolecular structures: all PDB X-ray structures are re-refined using the latest crystallographic methods, improving R-factors, geometry, and fit to electron density. Returns 200+ quality metrics including: R-factor (RFIN), R-free (RFFIN), resolution (DATARESH), correlation coefficients (CCFFIN, CCWFIN), Ramachandran Z-score (ZRAMA), packing Z-score (ZPACKING), B-factor average (…
Overview
Get re-refined structure quality metrics from PDB-REDO for a given PDB entry. PDB-REDO is a databank of optimized macromolecular structures: all PDB X-ray structures are re-refined using the latest crystallographic methods, improving R-factors, geometry, and fit to electron density. Returns 200+ quality metrics including: R-factor (RFIN), R-free (RFFIN), resolution (DATARESH), correlation coefficients (CCFFIN, CCWFIN), Ramachandran Z-score (ZRAMA), packing Z-score (ZPACKING), B-factor average (BAVER), number of backbone/sidechain flips (NBBFLIP/NSCFLIP), space group (SPACEGROUP), and unit cell dimensions. Only available for X-ray crystal structures. Use lowercase PDB IDs.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default PDB REDO Get Structure Quality call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_PDB_REDO_get_structure_quality
- Tool name
- PDB_REDO_get_structure_quality
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse