Cortexa research tool·structure·pdbe_search

PDBeSearch Search By Organism

Search PDB structures filtered by organism through PDBe's Solr search. Combines keyword search with organism name filtering. Useful for finding species-specific protein structures. Example: searching for 'kinase' in 'Homo sapiens' returns human protein kinase structures sorted by resolution.

Livelast probed 2026-04-30 23:07Z· 111msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 111ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "limit": {
      "description": "Maximum results to return (1-50, default 10).",
      "type": [
        "integer",
        "null"
      ]
    },
    "organism": {
      "description": "Scientific name of organism. Examples: 'Homo sapiens', 'Escherichia coli', 'Mus musculus', 'Saccharomyces cerevisiae'.",
      "type": "string"
    },
    "query": {
      "description": "Optional keyword query to combine with organism filter. Examples: 'kinase', 'receptor'. Default searches all structures for the organism.",
      "type": [
        "string",
        "null"
      ]
    }
  },
  "required": [
    "organism"
  ],
  "type": "object"
}

Examples (1)

Default PDBeSearch Search By Organism call

public-safeinput

{
  "organism": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_PDBeSearch_search_by_organism
Tool name: PDBeSearch_search_by_organism
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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