PDBeValidation Get Quality Scores
Get global quality validation scores for a PDB structure from PDBe. Returns percentile rankings for Ramachandran outliers, rotamer outliers, and clashscore. Each metric has a raw value, an absolute percentile (compared to all structures), and a relative percentile (compared to structures at similar resolution). Higher percentile = better quality. Essential for assessing whether a structure is reliable enough for downstream analysis. Example: 4HHB (hemoglobin) has clashscore raw=141.11 (absolute…
Overview
Get global quality validation scores for a PDB structure from PDBe. Returns percentile rankings for Ramachandran outliers, rotamer outliers, and clashscore. Each metric has a raw value, an absolute percentile (compared to all structures), and a relative percentile (compared to structures at similar resolution). Higher percentile = better quality. Essential for assessing whether a structure is reliable enough for downstream analysis. Example: 4HHB (hemoglobin) has clashscore raw=141.11 (absolute: 0.0%, relative: 0.0% - very poor by modern standards); 1TUP (p53-DNA complex) has similar vintage quality issues.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default PDBeValidation Get Quality Scores call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_PDBeValidation_get_quality_scores
- Tool name
- PDBeValidation_get_quality_scores
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse