PDC Get Quant Data Matrix
Get the quantitative protein abundance matrix (gene x aliquot/case) for a CPTAC/PDC study - the core quantitative CPTAC output (log2 ratios / abundance values), NOT spectral counts. PDC's other tools return study metadata, programs, clinical data, and per-gene spectral counts (presence evidence) only. Given a PDC study ID (e.g. 'PDC000127' for CPTAC CCRCC) and a data_type (e.g. 'log2_ratio'), returns the column header of aliquot identifiers and per-gene quantitative value rows. The full matrix…
Overview
Get the quantitative protein abundance matrix (gene x aliquot/case) for a CPTAC/PDC study - the core quantitative CPTAC output (log2 ratios / abundance values), NOT spectral counts. PDC's other tools return study metadata, programs, clinical data, and per-gene spectral counts (presence evidence) only. Given a PDC study ID (e.g. 'PDC000127' for CPTAC CCRCC) and a data_type (e.g. 'log2_ratio'), returns the column header of aliquot identifiers and per-gene quantitative value rows. The full matrix can be thousands of genes x hundreds of aliquots; gene rows are truncated to max_genes (default 50) while the aliquot header is always returned in full. Find study IDs with PDC_search_studies or PDC_get_study_summary.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default PDC Get Quant Data Matrix call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_PDC_get_quant_data_matrix
- Tool name
- PDC_get_quant_data_matrix
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse