Cortexa research tool·genomics·pride

PRIDE Search Proteomics

Search the PRIDE Archive for proteomics experiments and mass spectrometry datasets. Returns project metadata including accession IDs (PXD...), species, tissue types, instruments, publication dates, and file counts. Use this to discover protein expression data, PTM studies, and downloadable raw files for reanalysis. Example queries: 'breast cancer', 'phosphorylation', 'COVID-19 proteome'.

Livelast probed 2026-04-30 23:07Z· 123msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 123ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "page_size": {
      "default": 20,
      "description": "Number of projects to return per page (default: 20, max: 100)",
      "type": "integer"
    },
    "query": {
      "description": "Search keywords for proteomics experiments. Examples: 'cancer', 'phosphorylation', 'liver proteome', 'COVID-19'. Searches across project titles, descriptions, species, and tissues.",
      "type": "string"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Examples (1)

Default PRIDE Search Proteomics call

public-safeinput

{
  "page_size": 1,
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_PRIDE_search_proteomics
Tool name: PRIDE_search_proteomics
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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