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Research tool·genomics·pathoplexus
Pathoplexus Count Sequences
Count and aggregate open pathogen genome sequences in Pathoplexus (LAPIS) for genomic-epidemiology surveillance of emerging pathogens. Returns sequence counts for an organism, optionally filtered by country and lineage and grouped by a metadata field (e.g. geoLocCountry, lineage, sampleCollectionDate) to see geographic/temporal distribution. Known organisms: 'west-nile', 'ebola-zaire', 'ebola-sudan', 'cchf' (Crimean-Congo hemorrhagic fever), 'mpox'. No API key required.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
JSON · 33 lines · 712 chars
Examples (1)
Default Pathoplexus Count Sequences call
Public-safe example · rate-limited
JSON input · 5 lines · 80 chars
Expected response keys: success
Identifiers
- Catalog ID
- tu_Pathoplexus_count_sequences
- Tool name
- Pathoplexus_count_sequences
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse