Pathoplexus Get Sequence Details
List the individual sequence records (not aggregated counts) behind a Pathoplexus organism, from the LAPIS /details endpoint. Returns a per-sequence metadata table — accession, country (geoLocCountry), collection date (sampleCollectionDate), host, lineage, clade and any other requested fields — so you can enumerate the actual surveilled genomes rather than only their totals. Optionally filter by country and lineage and select which fields to return. Known organisms: 'west-nile', 'ebola-zaire',…
Overview
List the individual sequence records (not aggregated counts) behind a Pathoplexus organism, from the LAPIS /details endpoint. Returns a per-sequence metadata table — accession, country (geoLocCountry), collection date (sampleCollectionDate), host, lineage, clade and any other requested fields — so you can enumerate the actual surveilled genomes rather than only their totals. Optionally filter by country and lineage and select which fields to return. Known organisms: 'west-nile', 'ebola-zaire', 'ebola-sudan', 'cchf', 'mpox'. No API key required.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default Pathoplexus Get Sequence Details call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_Pathoplexus_get_sequence_details
- Tool name
- Pathoplexus_get_sequence_details
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse