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Research tool·genomics·pathoplexus
Pathoplexus Get Sequences Fasta
Download the actual genome sequences (FASTA) from Pathoplexus/LAPIS for a surveilled pathogen. Returns unaligned (default) or aligned nucleotide or amino-acid sequences as FASTA text, optionally filtered by country and lineage. This is the only way in Cortexa Tool Mesh to retrieve the nucleotide/protein sequence of Pathoplexus genomes — the other tools expose only counts and mutations. Known organisms: 'west-nile', 'ebola-zaire', 'ebola-sudan', 'cchf', 'mpox'. No API key required.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
JSON · 47 lines · 991 chars
Examples (1)
Default Pathoplexus Get Sequences Fasta call
Public-safe example · rate-limited
JSON input · 7 lines · 116 chars
Expected response keys: success
Identifiers
- Catalog ID
- tu_Pathoplexus_get_sequences_fasta
- Tool name
- Pathoplexus_get_sequences_fasta
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse