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Research tool·genomics·pathoplexus

Pathoplexus Get Sequences Fasta

Download the actual genome sequences (FASTA) from Pathoplexus/LAPIS for a surveilled pathogen. Returns unaligned (default) or aligned nucleotide or amino-acid sequences as FASTA text, optionally filtered by country and lineage. This is the only way in Cortexa Tool Mesh to retrieve the nucleotide/protein sequence of Pathoplexus genomes — the other tools expose only counts and mutations. Known organisms: 'west-nile', 'ebola-zaire', 'ebola-sudan', 'cchf', 'mpox'. No API key required.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

View JSON schemaExpandCollapse
JSON · 47 lines · 991 chars

Examples (1)

Default Pathoplexus Get Sequences Fasta call

Public-safe example · rate-limited

JSON input · 7 lines · 116 chars
Expected response keys: success

Identifiers

Catalog ID
tu_Pathoplexus_get_sequences_fasta
Tool name
Pathoplexus_get_sequences_fasta
Added
2026-07-29 18:13Z
Tags
tooluniverse
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