Cortexa research tool·chemistry·pathwaycommons

PathwayCommons Get Pathway

Get detailed pathway information from Pathway Commons by URI. Returns the pathway name, participants (proteins, small molecules, complexes), and processes (interactions, catalysis, controls). Use URIs from PathwayCommons_search results. Covers Reactome, KEGG, WikiPathways, PID, and other sources. Response is parsed from BioPAX/JSON-LD format.

Livelast probed 2026-04-30 23:07Z· 90msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 90ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "uri": {
      "description": "Pathway Commons URI from search results, e.g., http://bioregistry.io/reactome:R-HSA-5693532 (DNA Double-Strand Break Repair)",
      "type": "string"
    }
  },
  "required": [
    "uri"
  ],
  "type": "object"
}

Examples (1)

Default PathwayCommons Get Pathway call

public-safeinput

{
  "uri": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_PathwayCommons_get_pathway
Tool name: PathwayCommons_get_pathway
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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