Pfam Get Family Proteomes
Get the proteome (organism) distribution for a Pfam protein family. Returns the list of reference proteomes that contain proteins with this Pfam domain, including organism names, taxonomy IDs, and whether the proteome is a reference proteome. This reveals the taxonomic distribution of a domain across the tree of life. For example, PF00001 (7tm_1 GPCR) is found in 1,890 proteomes spanning from early-diverging animals to humans, while PF00076 (RRM_1 RNA recognition motif) is in 6,831 proteomes. U…
Overview
Get the proteome (organism) distribution for a Pfam protein family. Returns the list of reference proteomes that contain proteins with this Pfam domain, including organism names, taxonomy IDs, and whether the proteome is a reference proteome. This reveals the taxonomic distribution of a domain across the tree of life. For example, PF00001 (7tm_1 GPCR) is found in 1,890 proteomes spanning from early-diverging animals to humans, while PF00076 (RRM_1 RNA recognition motif) is in 6,831 proteomes. Use this to understand the evolutionary spread of a protein domain.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default Pfam Get Family Proteomes call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_Pfam_get_family_proteomes
- Tool name
- Pfam_get_family_proteomes
- Added
- 2026-05-01 00:58Z
- Tags
- tooluniverse