PharmacoDB Get Molecular Profiling
Get the per-cell-line molecular profiling inventory from PharmacoDB: which molecular data types (e.g., Kallisto RNA-seq isoforms, rnaseq, rna microarray, mutation, cnv) are available for a given cancer cell line, and in which pharmacogenomics dataset (CCLE, CTRPv2, FIMM, GDSC1/2, gCSI, etc.), with the number of profiles available (num_prof). Use this to confirm a cell line has the omics layer you need before pulling biomarker associations. Look up by cell_line_name (e.g., 'MCF-7') or cell_line_…
Overview
Get the per-cell-line molecular profiling inventory from PharmacoDB: which molecular data types (e.g., Kallisto RNA-seq isoforms, rnaseq, rna microarray, mutation, cnv) are available for a given cancer cell line, and in which pharmacogenomics dataset (CCLE, CTRPv2, FIMM, GDSC1/2, gCSI, etc.), with the number of profiles available (num_prof). Use this to confirm a cell line has the omics layer you need before pulling biomarker associations. Look up by cell_line_name (e.g., 'MCF-7') or cell_line_id. Example: cell_line_name='MCF-7' (cell id 273) returns records like {dataset CCLE, mDataType 'Kallisto_0.46.1.rnaseq', num_prof 1} plus mutation/cnv/rna layers.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default PharmacoDB Get Molecular Profiling call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_PharmacoDB_get_molecular_profiling
- Tool name
- PharmacoDB_get_molecular_profiling
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse