Cortexa research tool·clinical·progenetix

Progenetix Cnv Search

Search for cancer biosamples with copy number variations (CNVs) in a specific genomic region. Combines disease filter with genomic coordinates to find samples with amplifications or deletions in genes of interest. Uses RefSeq chromosome accessions for coordinates. Example: searching for EGFR amplifications (refseq:NC_000007.14:55019017-55211628, DUP) in breast cancer (NCIT:C4017) returns 9 matching biosamples.

Livelast probed 2026-05-01 01:00Z· 98msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 98ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "end": {
      "description": "End position (1-based, GRCh38). Example: 55211628 for EGFR end.",
      "type": "integer"
    },
    "filters": {
      "default": "",
      "description": "Optional NCIt ontology code to filter by cancer type. Example: 'NCIT:C4017' for breast cancer.",
      "type": "string"
    },
    "limit": {
      "default": 10,
      "description": "Maximum number of biosamples to return (default: 10).",
      "maximum": 100,
      "minimum": 1,
      "type": "integer"
    },
    "reference_name": {
      "description": "RefSeq chromosome accession. Examples: 'refseq:NC_000007.14' (chr7/GRCh38), 'refseq:NC_000017.11' (chr17/GRCh38), 'refseq:NC_000001.11' (chr1/GRCh38).",
      "type": "string"
    },
    "start": {
      "description": "Start position (1-based, GRCh38). Example: 55019017 for EGFR start.",
      "type": "integer"
    },
    "variant_type": {
      "default": "",
      "description": "CNV type: 'DUP' for amplification/duplication, 'DEL' for deletion. Leave empty for any CNV type.",
      "type": "string"
    }
  },
  "required": [
    "reference_name",
    "start",
    "end"
  ],
  "type": "object"
}

Examples (1)

Default Progenetix Cnv Search call

public-safeinput

{
  "end": 1,
  "limit": 3,
  "reference_name": "",
  "start": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_Progenetix_cnv_search
Tool name: Progenetix_cnv_search
Added: 2026-05-01 00:58Z
Tags: tooluniverse

Progenetix Cnv Search

Livelast probed 2026-05-01 01:00Z· 98msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "end": { "description": "End position (1-based, GRCh38). Example: 55211628 for EGFR end.", "type": "integer" }, "filters": { "default": "", "description": "Optional NCIt ontology code to filter by cancer type. Example: 'NCIT:C4017' for breast cancer.", "type": "string" }, "limit": { "default": 10, "description": "Maximum number of biosamples to return (default: 10).", "maximum": 100, "minimum": 1, "type": "integer" }, "reference_name": { "description": "RefSeq chromosome accession. Examples: 'refseq:NC_000007.14' (chr7/GRCh38), 'refseq:NC_000017.11' (chr17/GRCh38), 'refseq:NC_000001.11' (chr1/GRCh38).", "type": "string" }, "start": { "description": "Start position (1-based, GRCh38). Example: 55019017 for EGFR start.", "type": "integer" }, "variant_type": { "default": "", "description": "CNV type: 'DUP' for amplification/duplication, 'DEL' for deletion. Leave empty for any CNV type.", "type": "string" } }, "required": [ "reference_name", "start", "end" ], "type": "object" }