Cortexa research tool·genomics·progenetix

Progenetix Search Biosamples

Search cancer tumor biosamples in the Progenetix database by NCIt disease ontology code. Progenetix contains genome-wide copy number variation (CNV) profiles from over 100,000 tumor samples. Returns biosample IDs, histological diagnosis, pathological stage, and external references. Uses the GA4GH Beacon v2 protocol. Example: NCIT:C3058 returns 28 glioblastoma biosamples with histological classification and study references.

Livelast probed 2026-05-01 00:32Z· 2402msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 2402ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "filters": {
      "description": "NCIt ontology code to filter biosamples by cancer type. Examples: 'NCIT:C3058' (Glioblastoma), 'NCIT:C4017' (Breast Carcinoma), 'NCIT:C9145' (Acute Myeloid Leukemia), 'NCIT:C3224' (Melanoma), 'NCIT:C4872' (Lung Adenocarcinoma), 'NCIT:C3167' (Neuroblastoma).",
      "type": "string"
    },
    "limit": {
      "default": 10,
      "description": "Maximum number of biosamples to return (default: 10).",
      "maximum": 100,
      "minimum": 1,
      "type": "integer"
    },
    "skip": {
      "default": 0,
      "description": "Number of results to skip for pagination (default: 0).",
      "type": "integer"
    }
  },
  "required": [
    "filters"
  ],
  "type": "object"
}

Examples (1)

Default Progenetix Search Biosamples call

input

{
  "filters": "",
  "limit": 3,
  "skip": 1
}

Expected response keys: success

Identifiers

Catalog ID: tu_Progenetix_search_biosamples
Tool name: Progenetix_search_biosamples
Added: 2026-04-30 22:47Z
Tags: tooluniverse, slow

Progenetix Search Biosamples

Livelast probed 2026-05-01 00:32Z· 2402msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "filters": { "description": "NCIt ontology code to filter biosamples by cancer type. Examples: 'NCIT:C3058' (Glioblastoma), 'NCIT:C4017' (Breast Carcinoma), 'NCIT:C9145' (Acute Myeloid Leukemia), 'NCIT:C3224' (Melanoma), 'NCIT:C4872' (Lung Adenocarcinoma), 'NCIT:C3167' (Neuroblastoma).", "type": "string" }, "limit": { "default": 10, "description": "Maximum number of biosamples to return (default: 10).", "maximum": 100, "minimum": 1, "type": "integer" }, "skip": { "default": 0, "description": "Number of results to skip for pagination (default: 0).", "type": "integer" } }, "required": [ "filters" ], "type": "object" }