Cortexa research tool·genomics·pubtator

PubTator3 EntityAutocomplete

Provides suggestions for the best‐matching standardized PubTator IDs for a partial biomedical term (gene, disease, chemical, or variant). Use this tool first to convert free‐text names into the stable @IDs required by the other PubTator APIs.

Livelast probed 2026-04-30 23:07Z· 96msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 96ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "entity_type": {
      "description": "Optional filter to restrict suggestions to a single category such as GENE, DISEASE, CHEMICAL, or VARIANT.",
      "type": "string"
    },
    "max_results": {
      "description": "Maximum number of suggestions to return (1 - 50, default = 10).",
      "type": "integer"
    },
    "text": {
      "description": "A few characters or the full name of the biomedical concept you are trying to look up (e.g. “BRAF V6”).",
      "type": "string"
    }
  },
  "required": [
    "text"
  ],
  "type": "object"
}

Examples (1)

Default PubTator3 EntityAutocomplete call

public-safeinput

{
  "max_results": 1,
  "text": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_PubTator3_EntityAutocomplete
Tool name: PubTator3_EntityAutocomplete
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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