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Cortexa research tool·structure·pubtator3_ext
PubTator3 Get Annotations
Extract biomedical entity annotations from PubMed articles using NCBI PubTator3. Given one or more PubMed IDs (PMIDs), returns text-mined entities including genes, diseases, chemicals, species, mutations, and cell lines with their normalized identifiers (NCBI Gene ID, MeSH, NCBI Taxonomy, etc.) and text positions. Useful for extracting structured biomedical knowledge from literature. Provide PMIDs as a comma-separated string.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 17 lines · 501 chars
Examples (1)
Default PubTator3 Get Annotations call
public-safeinput
JSON · 3 lines · 17 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_PubTator3_get_annotations
- Tool name
- PubTator3_get_annotations
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse