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Cortexa research tool·structure·pubtator3_ext

PubTator3 Get Annotations

Extract biomedical entity annotations from PubMed articles using NCBI PubTator3. Given one or more PubMed IDs (PMIDs), returns text-mined entities including genes, diseases, chemicals, species, mutations, and cell lines with their normalized identifiers (NCBI Gene ID, MeSH, NCBI Taxonomy, etc.) and text positions. Useful for extracting structured biomedical knowledge from literature. Provide PMIDs as a comma-separated string.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 17 lines · 501 chars

Examples (1)

Default PubTator3 Get Annotations call

public-safeinput
JSON · 3 lines · 17 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_PubTator3_get_annotations
Tool name
PubTator3_get_annotations
Added
2026-04-30 22:47Z
Tags
tooluniverse
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TermsPrivacy·For research context only · Not medical, legal, or financial advice.