ReactomeAnalysis Expression Analysis
Quantitative EXPRESSION analysis: map fold-change or numeric expression values onto Reactome pathways (analysis type=EXPRESSION). Unlike ReactomeAnalysis_pathway_enrichment (which only accepts a plain newline-separated identifier list and runs overrepresentation), this tool submits TAB-DELIMITED 'GENE\tVALUE' rows so Reactome treats the input as an expression matrix and overlays each value per pathway. Each returned pathway carries 'entities_exp' (the matched expression values for that pathway)…
Overview
Quantitative EXPRESSION analysis: map fold-change or numeric expression values onto Reactome pathways (analysis type=EXPRESSION). Unlike ReactomeAnalysis_pathway_enrichment (which only accepts a plain newline-separated identifier list and runs overrepresentation), this tool submits TAB-DELIMITED 'GENE\tVALUE' rows so Reactome treats the input as an expression matrix and overlays each value per pathway. Each returned pathway carries 'entities_exp' (the matched expression values for that pathway) and the result reports the expression column names plus the min/max of the submitted values. Example: submitting 'PTEN\t2.5\nTP53\t-1.8\nEGFR\t3.1' returns analysis_type=EXPRESSION with pathways such as 'Regulation of TP53 Expression' carrying entities_exp=[-1.8].
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default ReactomeAnalysis Expression Analysis call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_ReactomeAnalysis_expression_analysis
- Tool name
- ReactomeAnalysis_expression_analysis
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse