Cortexa research tool·structure·rfam

Rfam Get Structure Mapping

Get mapping between Rfam family and 3D structures (PDB). Returns correspondence between RNA family, EMBL sequence regions, and PDB residues. Shows which structures are available for the family. Tab-delimited format includes PDB IDs, chains, residue ranges, and alignments. Use for: structure-function analysis, 3D visualization, structural annotation, integrating sequence and structure data. Links Rfam families to experimental structures.

Livelast probed 2026-04-30 23:07Z· 99msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 99ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "family_id": {
      "description": "Required: Rfam accession or family name",
      "type": "string"
    },
    "format": {
      "default": "json",
      "description": "Output format",
      "enum": [
        "json",
        "xml",
        "text"
      ],
      "type": "string"
    },
    "operation": {
      "description": "Operation type",
      "enum": [
        "get_structure_mapping"
      ],
      "type": "string"
    }
  },
  "required": [
    "operation",
    "family_id"
  ],
  "type": "object"
}

Examples (1)

Default Rfam Get Structure Mapping call

public-safeinput

{
  "family_id": "",
  "operation": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_Rfam_get_structure_mapping
Tool name: Rfam_get_structure_mapping
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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