Rfam Search Sequence

Search RNA sequence against all Rfam families using Infernal cmscan. Submits sequence to batch search server, polls for completion, and returns hits with family matches, positions, scores, and E-values. Typically completes in 4-5 seconds for short sequences. Results available for 1 week. Use for: annotating novel RNA sequences, identifying RNA family membership, finding conserved elements, structural RNA discovery. Returns family IDs, alignment details, and significance scores.