Cortexa research tool·genomics·sabiork

SABIO RK Search Reactions

Search SABIO-RK database for biochemical reaction kinetic parameters. Returns Km, kcat, Vmax, Ki values with substrate specificity, organism, and literature references. No authentication required. Search by EC number (e.g., 1.1.1.1), enzyme name (e.g., alcohol dehydrogenase), substrate (e.g., ethanol), organism (e.g., Homo sapiens), or product. SABIO-RK contains >200,000 kinetic entries curated from published literature.

Livelast probed 2026-04-30 23:07Z· 106msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 106ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "ec_number": {
      "description": "EC number (e.g., 1.1.1.1 for alcohol dehydrogenase, 2.7.1.1 for hexokinase)",
      "type": "string"
    },
    "enzyme_name": {
      "description": "Enzyme common name (e.g., alcohol dehydrogenase, hexokinase, lactate dehydrogenase)",
      "type": "string"
    },
    "limit": {
      "description": "Maximum number of kinetic laws to return (default 20, max 100)",
      "type": [
        "integer",
        "null"
      ]
    },
    "operation": {
      "const": "search_reactions",
      "description": "Operation type (fixed: search_reactions)",
      "type": "string"
    },
    "organism": {
      "description": "Organism name (e.g., Homo sapiens, Escherichia coli, Saccharomyces cerevisiae)",
      "type": "string"
    },
    "parameter_type": {
      "description": "Filter by kinetic parameter type (e.g., Km, kcat, Vmax, Ki)",
      "type": "string"
    },
    "product": {
      "description": "Product name (e.g., acetaldehyde, pyruvate)",
      "type": "string"
    },
    "substrate": {
      "description": "Substrate name (e.g., ethanol, glucose, ATP)",
      "type": "string"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default SABIO RK Search Reactions call

public-safeinput

{}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_SABIO_RK_search_reactions
Tool name: SABIO_RK_search_reactions
Added: 2026-04-30 22:47Z
Tags: tooluniverse

SABIO RK Search Reactions

Livelast probed 2026-04-30 23:07Z· 106msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "ec_number": { "description": "EC number (e.g., 1.1.1.1 for alcohol dehydrogenase, 2.7.1.1 for hexokinase)", "type": "string" }, "enzyme_name": { "description": "Enzyme common name (e.g., alcohol dehydrogenase, hexokinase, lactate dehydrogenase)", "type": "string" }, "limit": { "description": "Maximum number of kinetic laws to return (default 20, max 100)", "type": [ "integer", "null" ] }, "operation": { "const": "search_reactions", "description": "Operation type (fixed: search_reactions)", "type": "string" }, "organism": { "description": "Organism name (e.g., Homo sapiens, Escherichia coli, Saccharomyces cerevisiae)", "type": "string" }, "parameter_type": { "description": "Filter by kinetic parameter type (e.g., Km, kcat, Vmax, Ki)", "type": "string" }, "product": { "description": "Product name (e.g., acetaldehyde, pyruvate)", "type": "string" }, "substrate": { "description": "Substrate name (e.g., ethanol, glucose, ATP)", "type": "string" } }, "required": [], "type": "object" }