Cortexa research tool·structure·sabdab

SAbDab Search Structures

Search SAbDab structural antibody database. Returns a direct browse URL to matching antibody structures — SAbDab's search endpoint does not expose a JSON API, so use SAbDab_get_structure with a known PDB ID for structured data. Tip: retrieve the full SAbDab summary TSV from https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabdab/summary/?all=true for bulk filtering.

Livelast probed 2026-05-01 01:00Z· 81msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 81ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "antigen": {
      "description": "Alias for query. Antigen name to search (e.g., 'EGFR', 'HER2').",
      "type": "string"
    },
    "limit": {
      "default": 50,
      "description": "Maximum results (default: 50)",
      "type": "integer"
    },
    "operation": {
      "const": "search_structures",
      "type": "string"
    },
    "query": {
      "description": "Search query - antigen name, species, or keywords (e.g., 'HER2', 'anti-CD20')",
      "type": "string"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default SAbDab Search Structures call

public-safeinput

{
  "limit": 3,
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_SAbDab_search_structures
Tool name: SAbDab_search_structures
Added: 2026-05-01 00:58Z
Tags: tooluniverse

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