SCXA Get Cluster Marker Genes
Get EBI Single Cell Expression Atlas computed marker genes per cell cluster (or per cell type) for an experiment - results that SCXA_list_experiments and SCXA_search_gene cannot retrieve. marker_type='clusters' (default): top marker genes per cell cluster at clustering resolution k (requires `k`); each row has geneName, the cell-group it marks, expression value, p-value, and unit (CPM). marker_type='cell_types': marker genes for inferred cell types (requires `organism_part`). Example: E-MTAB-50…
Overview
Get EBI Single Cell Expression Atlas computed marker genes per cell cluster (or per cell type) for an experiment - results that SCXA_list_experiments and SCXA_search_gene cannot retrieve. marker_type='clusters' (default): top marker genes per cell cluster at clustering resolution k (requires `k`); each row has geneName, the cell-group it marks, expression value, p-value, and unit (CPM). marker_type='cell_types': marker genes for inferred cell types (requires `organism_part`). Example: E-MTAB-5061 k=8 -> rows like {gene_name: ENSG00000224981, cell_group_value_where_marker: '1', p_value: 4.37e-71, expression_unit: CPM}. E-ENAD-13 k=4 -> Olfm4 p_value 3.0e-179.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default SCXA Get Cluster Marker Genes call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_SCXA_get_cluster_marker_genes
- Tool name
- SCXA_get_cluster_marker_genes
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse