TargetMine Search

Overview

Search TargetMine, the InterMine data warehouse focused on drug target discovery and prioritization. TargetMine integrates data from UniProt, PDB, ChEMBL, Reactome, KEGG, DrugBank, TTD, and clinical trials databases. Searches across genes, proteins, pathways, disease terms, drugs, and biomarkers. Use this to find drug targets, investigate target-disease associations, and explore chemical-genomics data. Filter by facet_Category for specific entity types (e.g., 'Gene', 'Protein', 'Pathway', 'DiseaseTerm', 'IPFBiomarker', 'IPFTrial').

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed

1d ago

Last success

1d ago

Last latency

124ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "facet_Category": {
      "description": "Filter by entity category. Options: 'Gene', 'Protein', 'Pathway', 'DiseaseTerm', 'DiseaseConcept', 'IPFBiomarker', 'IPFTrial', 'WHOTrial', 'IPF', 'UMLSTerm', 'MeshTerm', 'EFOTerm', 'DOTerm', 'GOTerm', 'Transcript', 'Exon', 'MRNA', 'IntegratedPathwayCluster', 'TbcAnnotation'.",
      "type": "string"
    },
    "format": {
      "default": "json",
      "description": "Response format. Must be 'json'.",
      "type": "string"
    },
    "q": {
      "description": "Search query: gene symbol (e.g., 'TP53', 'EGFR', 'BRCA1'), protein name, drug name, disease term, or free text.",
      "type": "string"
    },
    "size": {
      "default": 10,
      "description": "Number of results to return (default: 10).",
      "type": "integer"
    }
  },
  "required": [
    "q"
  ],
  "type": "object"
}

Examples (1)

{
  "q": "",
  "size": 1
}

Identifiers

Catalog ID

tu_TargetMine_search

Tool name

TargetMine_search

Added

2026-04-30 22:47Z

Tags

tooluniverse