UniBind Get Dataset
Retrieve full direct transcription factor (TF)-DNA binding-site detail for one UniBind dataset by its dataset_id (e.g. 'EXP030726.neural_stem_cells.SMAD3', obtained from UniBind_search_datasets). Returns the TF name, cell line/tissue, biological condition, source identifiers (GEO/ENCODE/PubMed), the JASPAR motif IDs used, and a list of TFBS model blocks. Each TFBS model gives the JASPAR motif (jaspar_id + version), total number of predicted binding sites (total_tfbs), the PWM score threshold, t…
Overview
Retrieve full direct transcription factor (TF)-DNA binding-site detail for one UniBind dataset by its dataset_id (e.g. 'EXP030726.neural_stem_cells.SMAD3', obtained from UniBind_search_datasets). Returns the TF name, cell line/tissue, biological condition, source identifiers (GEO/ENCODE/PubMed), the JASPAR motif IDs used, and a list of TFBS model blocks. Each TFBS model gives the JASPAR motif (jaspar_id + version), total number of predicted binding sites (total_tfbs), the PWM score threshold, the centrality distance threshold, the CentriMo adjusted enrichment p-value, and direct download URLs for the binding sites in BED format, the underlying sequences in FASTA, and a summary plot. These are motif-anchored, base-pair-resolution, experimentally supported direct binding sites - distinct from raw ChIP-seq peaks. Public, no API key.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default UniBind Get Dataset call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_UniBind_get_dataset
- Tool name
- UniBind_get_dataset
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse