Cortexa research tool·drug discovery·uniprot_idmapping

UniProtIDMap Convert Ids

Convert protein/gene identifiers between databases using the UniProt ID Mapping service. Submits a mapping job and polls for results. Supports 100+ databases including UniProtKB, Gene Names, Ensembl, RefSeq, PDB, ChEMBL, and more. The canonical service for cross-database identifier conversion in proteomics and genomics. Example: convert gene names TP53,BRCA1,EGFR to UniProtKB accessions (P04637, P38398, P00533). Returns mapped IDs with from/to pairs.

Livelast probed 2026-04-30 23:07Z· 123msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 123ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "from_db": {
      "description": "Source database. Common values: 'Gene_Name', 'UniProtKB_AC-ID', 'Ensembl', 'Ensembl_Genomes', 'RefSeq_Protein', 'PDB', 'ChEMBL', 'GeneCards', 'HGNC'. See UniProt ID Mapping docs for full list.",
      "type": "string"
    },
    "ids": {
      "description": "Comma-separated identifiers to convert. Examples: 'TP53,BRCA1,EGFR' (gene names), 'P04637,P38398' (UniProt ACs), 'ENSG00000141510' (Ensembl).",
      "type": "string"
    },
    "tax_id": {
      "description": "NCBI Taxonomy ID to restrict results. Examples: 9606 (human), 10090 (mouse), 10116 (rat). Optional but recommended for gene names.",
      "type": [
        "integer",
        "null"
      ]
    },
    "to_db": {
      "default": "UniProtKB",
      "description": "Target database. Common values: 'UniProtKB', 'UniProtKB-Swiss-Prot', 'Gene_Name', 'Ensembl', 'RefSeq_Protein', 'PDB', 'ChEMBL', 'GeneCards'. Default: 'UniProtKB'.",
      "type": "string"
    }
  },
  "required": [
    "ids",
    "from_db"
  ],
  "type": "object"
}

Examples (1)

Default UniProtIDMap Convert Ids call

public-safeinput

{
  "from_db": "",
  "ids": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_UniProtIDMap_convert_ids
Tool name: UniProtIDMap_convert_ids
Added: 2026-04-30 22:47Z
Tags: tooluniverse

UniProtIDMap Convert Ids

Livelast probed 2026-04-30 23:07Z· 123msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "from_db": { "description": "Source database. Common values: 'Gene_Name', 'UniProtKB_AC-ID', 'Ensembl', 'Ensembl_Genomes', 'RefSeq_Protein', 'PDB', 'ChEMBL', 'GeneCards', 'HGNC'. See UniProt ID Mapping docs for full list.", "type": "string" }, "ids": { "description": "Comma-separated identifiers to convert. Examples: 'TP53,BRCA1,EGFR' (gene names), 'P04637,P38398' (UniProt ACs), 'ENSG00000141510' (Ensembl).", "type": "string" }, "tax_id": { "description": "NCBI Taxonomy ID to restrict results. Examples: 9606 (human), 10090 (mouse), 10116 (rat). Optional but recommended for gene names.", "type": [ "integer", "null" ] }, "to_db": { "default": "UniProtKB", "description": "Target database. Common values: 'UniProtKB', 'UniProtKB-Swiss-Prot', 'Gene_Name', 'Ensembl', 'RefSeq_Protein', 'PDB', 'ChEMBL', 'GeneCards'. Default: 'UniProtKB'.", "type": "string" } }, "required": [ "ids", "from_db" ], "type": "object" }