Cortexa research tool·genomics·uniprot_ref

UniProtRef Search Proteomes

Search UniProt reference proteomes by organism name, taxon ID, or keyword. Returns proteome IDs, organism names, proteome types, and total protein counts. Use this to find the reference proteome ID for an organism before using UniProtRef_get_proteome for detailed data. Example: searching 'Arabidopsis thaliana' returns UP000006548 (reference proteome with 39K+ proteins).

Livelast probed 2026-05-01 01:00Z· 100msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 100ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "query": {
      "description": "Search query for proteomes. Can be organism name or taxon ID. Examples: 'homo sapiens', 'mouse', 'Arabidopsis thaliana', '9606', 'Escherichia coli'.",
      "type": "string"
    },
    "size": {
      "description": "Maximum number of results to return (default: 10, max: 25).",
      "type": "integer"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Examples (1)

Default UniProtRef Search Proteomes call

public-safeinput

{
  "query": "BRCA1",
  "size": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_UniProtRef_search_proteomes
Tool name: UniProtRef_search_proteomes
Added: 2026-05-01 00:58Z
Tags: tooluniverse

Back to catalog