VEuPathDB Search Genes By Organism
Search a VEuPathDB pathogen-genome database for all genes belonging to a given organism/strain, using the EuPathDB WDK GenesByTaxonGene search (POST query). VEuPathDB is a family of sites that share one API: PlasmoDB (malaria, Plasmodium), ToxoDB (Toxoplasma), FungiDB (fungi), VectorBase (disease vectors), CryptoDB, GiardiaDB, MicrosporidiaDB, PiroplasmaDB, TrichDB, TriTrypDB and AmoebaDB. Choose the site with the 'project' parameter and give the full organism name (genus + species + strain). R…
Overview
Search a VEuPathDB pathogen-genome database for all genes belonging to a given organism/strain, using the EuPathDB WDK GenesByTaxonGene search (POST query). VEuPathDB is a family of sites that share one API: PlasmoDB (malaria, Plasmodium), ToxoDB (Toxoplasma), FungiDB (fungi), VectorBase (disease vectors), CryptoDB, GiardiaDB, MicrosporidiaDB, PiroplasmaDB, TrichDB, TriTrypDB and AmoebaDB. Choose the site with the 'project' parameter and give the full organism name (genus + species + strain). Returns one row per gene with primary key (gene ID), protein product, organism, gene type and genomic location. Example: organism='Plasmodium falciparum 3D7', project='plasmodb' returns the ~5,720 P. falciparum 3D7 genes.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default VEuPathDB Search Genes By Organism call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_VEuPathDB_search_genes_by_organism
- Tool name
- VEuPathDB_search_genes_by_organism
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse