Cortexa research tool·genomics·wikipathways_ext

WikiPathways Find Pathways By Gene

Find all WikiPathways pathways containing a specific gene. Takes a gene identifier (HGNC symbol, Entrez ID, or Ensembl ID) and returns all pathways in which that gene appears. Useful for understanding the biological context of a gene across curated pathway databases. Example: searching for 'TP53' returns multiple pathways including WP254 (Apoptosis), WP179 (Cell Cycle), and others. Supports multiple species.

Livelast probed 2026-04-30 23:07Z· 95msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 95ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "gene": {
      "description": "Gene identifier to search. Examples: 'TP53', 'BRCA1', 'EGFR', '7157' (Entrez), 'ENSG00000141510' (Ensembl).",
      "type": "string"
    },
    "species": {
      "default": "Homo sapiens",
      "description": "Species to filter results. Default: 'Homo sapiens'. Other options: 'Mus musculus', 'Rattus norvegicus', 'Danio rerio'.",
      "type": "string"
    }
  },
  "required": [
    "gene"
  ],
  "type": "object"
}

Examples (1)

Default WikiPathways Find Pathways By Gene call

public-safeinput

{
  "gene": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_WikiPathways_find_pathways_by_gene
Tool name: WikiPathways_find_pathways_by_gene
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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