Cortexa research tool·genomics·wikipathways_ext

WikiPathways Get Pathway Genes

Get all genes (as gene symbols) involved in a WikiPathways pathway. Returns the list of HGNC gene symbols for human pathways, or equivalent organism-specific gene identifiers. Useful for extracting gene sets from curated pathways for enrichment analysis or network building. Example: WP254 (Apoptosis) returns 88 genes including AKT1, APAF1, BAD, BAK1, BAX, BCL2, BCL2L1, BID, CASP3, CASP8, CASP9, CFLAR, CYCS, DIABLO, FADD, FAS, NFKB1, TP53, TRAF1, XIAP, and more.

Livelast probed 2026-04-30 23:07Z· 118msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 118ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "code": {
      "default": "H",
      "description": "Identifier system code for returned genes. Options: 'H' (HGNC symbols, default), 'En' (Ensembl), 'S' (UniProt), 'L' (Entrez Gene), 'Ce' (ChEBI for metabolites).",
      "type": "string"
    },
    "pathway_id": {
      "description": "WikiPathways pathway identifier. Examples: 'WP254' (Apoptosis, 88 genes), 'WP179' (Cell cycle, 100+ genes), 'WP4216' (Chromosomal and microsatellite instability), 'WP1584' (Type II diabetes mellitus).",
      "type": "string"
    }
  },
  "required": [
    "pathway_id"
  ],
  "type": "object"
}

Examples (1)

Default WikiPathways Get Pathway Genes call

public-safeinput

{
  "pathway_id": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_WikiPathways_get_pathway_genes
Tool name: WikiPathways_get_pathway_genes
Added: 2026-04-30 22:47Z
Tags: tooluniverse

WikiPathways Get Pathway Genes

Livelast probed 2026-04-30 23:07Z· 118msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "code": { "default": "H", "description": "Identifier system code for returned genes. Options: 'H' (HGNC symbols, default), 'En' (Ensembl), 'S' (UniProt), 'L' (Entrez Gene), 'Ce' (ChEBI for metabolites).", "type": "string" }, "pathway_id": { "description": "WikiPathways pathway identifier. Examples: 'WP254' (Apoptosis, 88 genes), 'WP179' (Cell cycle, 100+ genes), 'WP4216' (Chromosomal and microsatellite instability), 'WP1584' (Type II diabetes mellitus).", "type": "string" } }, "required": [ "pathway_id" ], "type": "object" }