WikiPathways Get Pathway Metabolites
Get the metabolite/compound participants (wp:Metabolite nodes) of a WikiPathways pathway. Unlike WikiPathways_get_pathway_genes (which returns gene products only), this returns the small-molecule metabolites that are the central entities of a metabolic pathway, each with its canonical cross-reference identifier (HMDB, ChEBI, KEGG, ChemSpider, etc.), the dc:source datasource, and a representative label. Example: WP534 (Glycolysis & Gluconeogenesis, human) returns metabolites including D-Glucose…
Overview
Get the metabolite/compound participants (wp:Metabolite nodes) of a WikiPathways pathway. Unlike WikiPathways_get_pathway_genes (which returns gene products only), this returns the small-molecule metabolites that are the central entities of a metabolic pathway, each with its canonical cross-reference identifier (HMDB, ChEBI, KEGG, ChemSpider, etc.), the dc:source datasource, and a representative label. Example: WP534 (Glycolysis & Gluconeogenesis, human) returns metabolites including D-Glucose (https://identifiers.org/hmdb/HMDB0000122), Aspartate (HMDB0000191), and D-Glyceraldehyde 3-phosphate (HMDB0001112). Use for metabolic-network reconstruction, metabolite-set enrichment, and mapping measured metabolites onto curated pathways.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default WikiPathways Get Pathway Metabolites call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_WikiPathways_get_pathway_metabolites
- Tool name
- WikiPathways_get_pathway_metabolites
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse