ZOOMA Annotate Text
Map a free-text term (e.g. a sample attribute, phenotype, organism name, anatomical part, or disease label) to ontology terms using EBI ZOOMA. Returns matched ontology terms as semantic-tag IRIs (OBO/EFO PURLs) with a confidence rating (HIGH/GOOD/MEDIUM/LOW), the curation source, the evidence type, and OLS lookup links. Use this when you have arbitrary text and need the most likely standardized ontology term(s) — for instance normalizing experiment metadata or resolving a disease/tissue name to…
Overview
Map a free-text term (e.g. a sample attribute, phenotype, organism name, anatomical part, or disease label) to ontology terms using EBI ZOOMA. Returns matched ontology terms as semantic-tag IRIs (OBO/EFO PURLs) with a confidence rating (HIGH/GOOD/MEDIUM/LOW), the curation source, the evidence type, and OLS lookup links. Use this when you have arbitrary text and need the most likely standardized ontology term(s) — for instance normalizing experiment metadata or resolving a disease/tissue name to an ontology ID. Optionally restrict matches to one or more ontologies (e.g. 'efo', 'mondo', 'uberon'), give a property type hint, set a minimum confidence, and cap the number of results.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default ZOOMA Annotate Text call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_ZOOMA_annotate_text
- Tool name
- ZOOMA_annotate_text
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse