Cortexa research tool·chemistry·cbioportal

CBioPortal Get Mutations

Get mutation data for specific genes in a cancer study. This uses the updated cBioPortal API that requires molecular profiles.

Livelast probed 2026-04-30 23:07Z· 115msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 115ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "gene_list": {
      "description": "Comma-separated gene symbols (e.g., 'BRCA1,BRCA2')",
      "type": "string"
    },
    "sample_list_id": {
      "description": "Optional sample list ID. If not provided, uses all samples in the study.",
      "type": "string"
    },
    "study_id": {
      "description": "Cancer study ID (e.g., 'brca_tcga')",
      "type": "string"
    }
  },
  "required": [
    "study_id",
    "gene_list"
  ],
  "type": "object"
}

Examples (1)

Default CBioPortal Get Mutations call

public-safeinput

{
  "gene_list": "BRCA1",
  "study_id": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_cBioPortal_get_mutations
Tool name: cBioPortal_get_mutations
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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