Cortexa research tool·genomics·civic

Civic Get Variants By Gene

Get all variants associated with a specific gene in CIViC database. Returns variant information including names, coordinates, and associated evidence. Use gene_name or gene_symbol (e.g., 'EGFR', 'BRAF') for convenience, or gene_id if already known. Uses cursor-based pagination to return up to 500 variants per call.

Livelast probed 2026-04-30 23:07Z· 87msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 87ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "gene": {
      "description": "Alias for gene_name. Gene symbol (e.g., 'EGFR', 'KRAS').",
      "type": "string"
    },
    "gene_id": {
      "description": "CIViC gene ID (e.g., 19 for EGFR, 12 for BRAF). Find gene IDs using civic_search_genes.",
      "type": "integer"
    },
    "gene_name": {
      "description": "Gene symbol (e.g., 'EGFR', 'BRAF', 'TP53'). Will be looked up automatically. Aliases: gene, gene_symbol, query.",
      "type": "string"
    },
    "gene_symbol": {
      "description": "Alias for gene_name. Standard gene symbol (e.g., 'KRAS', 'BRCA1', 'EGFR').",
      "type": "string"
    },
    "limit": {
      "default": 500,
      "description": "Maximum number of variants to return (default: 500, uses cursor pagination to bypass CIViC's 100/page server cap)",
      "type": "integer"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default Civic Get Variants By Gene call

public-safeinput

{
  "gene": "BRCA1",
  "gene_id": 1,
  "gene_name": "BRCA1",
  "gene_symbol": "BRCA1",
  "limit": 3
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_civic_get_variants_by_gene
Tool name: civic_get_variants_by_gene
Added: 2026-04-30 22:47Z
Tags: tooluniverse

Civic Get Variants By Gene

Livelast probed 2026-04-30 23:07Z· 87msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "gene": { "description": "Alias for gene_name. Gene symbol (e.g., 'EGFR', 'KRAS').", "type": "string" }, "gene_id": { "description": "CIViC gene ID (e.g., 19 for EGFR, 12 for BRAF). Find gene IDs using civic_search_genes.", "type": "integer" }, "gene_name": { "description": "Gene symbol (e.g., 'EGFR', 'BRAF', 'TP53'). Will be looked up automatically. Aliases: gene, gene_symbol, query.", "type": "string" }, "gene_symbol": { "description": "Alias for gene_name. Standard gene symbol (e.g., 'KRAS', 'BRCA1', 'EGFR').", "type": "string" }, "limit": { "default": 500, "description": "Maximum number of variants to return (default: 500, uses cursor pagination to bypass CIViC's 100/page server cap)", "type": "integer" } }, "required": [], "type": "object" }